Mercurial > repos > mvdbeek > sra_tools

view README.md @ 0:68527898a9ea draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://bitbucket.org/drosofff/gedtools/ commit 92d32947393757598262fbaed175b2c6fd84c181
author mvdbeek
date Fri, 25 Sep 2015 09:28:56 -0400
parents
children
line wrap: on
line source

[![Build Status](https://travis-ci.org/mdshw5/sra-tools-galaxy.svg?branch=master)](https://travis-ci.org/mdshw5/sra-tools-galaxy)

The Galaxy tool wrappers contained in this tool shed repository rely on software developed by
the NCBI: http://github.com/ncbi/sra-tools.

# INSTALLATION

Please use the Galaxy admin interface to install from the toolshed: https://toolshed.g2.bx.psu.edu/view/matt-shirley/ncbi_sra_toolkit

This software release was designed to install using the Galaxy toolshed under Linux and MacOS operating systems on Intel x86-compatible 32/64 bit architectures.

*Build Requirements*

- bash
- git
- make
- gcc
- g++
- perl
- libxml2

On a Debian OS use:

    apt-get install build-essential libxml2-dev git

On a Mac with [command line tools](https://developer.apple.com/downloads/index.action) installed:

    brew install git libxml2

CONTROLLED-ACCESS DATA

Encrypted, controlled-access data is not supported.