Mercurial > repos > mvdbeek > repeat_element_identifier

changeset 0:f62b463572f0 draft

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planemo upload for repository https://github.com/artbio/tools-artbio commit 3d96056b65a38e7642cfeef4ed274dc76b88472a-dirty
author mvdbeek
date Wed, 11 May 2016 13:21:09 -0400
parents
children b6eba97ffa0e
files repeat_element_identifier_tool.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repeat_element_identifier_tool.xml	Wed May 11 13:21:09 2016 -0400
@@ -0,0 +1,24 @@
+<tool id="repeat_element_identifier" name="repeat_element_identifier" version="0.0.1" hidden="false" >
+  <description>Analyze mismatch frequencies in BAM/SAM alignments</description>
+  <requirements>
+  </requirements>
+  <command>>
+		#for i in $rep
+			echo "$i.input_file.element_identifier" > "$output"
+		#end for
+  </command>
+  <inputs>
+    <repeat name="rep" title="input">
+      <param name="input_file" type="data" format="bam,sam" label="Alignment file" help="The input alignment file(s) for which to analyze the mismatches."/>
+    </repeat>
+  <outputs>
+    <data name="output" />
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+This tool will print the element identifier of files in a repeat section.
+  </help>
+  <citations>
+  </citations>
+</tool>
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