Mercurial > repos > mvdbeek > repeat_element_identifier
comparison repeat_element_identifier_tool.xml @ 0:f62b463572f0 draft
planemo upload for repository https://github.com/artbio/tools-artbio commit 3d96056b65a38e7642cfeef4ed274dc76b88472a-dirty
| author | mvdbeek |
|---|---|
| date | Wed, 11 May 2016 13:21:09 -0400 |
| parents | |
| children | b6eba97ffa0e |
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| -1:000000000000 | 0:f62b463572f0 |
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| 1 <tool id="repeat_element_identifier" name="repeat_element_identifier" version="0.0.1" hidden="false" > | |
| 2 <description>Analyze mismatch frequencies in BAM/SAM alignments</description> | |
| 3 <requirements> | |
| 4 </requirements> | |
| 5 <command>> | |
| 6 #for i in $rep | |
| 7 echo "$i.input_file.element_identifier" > "$output" | |
| 8 #end for | |
| 9 </command> | |
| 10 <inputs> | |
| 11 <repeat name="rep" title="input"> | |
| 12 <param name="input_file" type="data" format="bam,sam" label="Alignment file" help="The input alignment file(s) for which to analyze the mismatches."/> | |
| 13 </repeat> | |
| 14 <outputs> | |
| 15 <data name="output" /> | |
| 16 </outputs> | |
| 17 <tests> | |
| 18 </tests> | |
| 19 <help> | |
| 20 This tool will print the element identifier of files in a repeat section. | |
| 21 </help> | |
| 22 <citations> | |
| 23 </citations> | |
| 24 </tool> |