Mercurial > repos > mvdbeek > package_sra_toolkit_2_5_2

comparison tool_dependencies.xml @ 4:9b27d2331ce2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 4abfa4aaee08afe2a3246420ce5d131e1c1d42d8-dirty
author mvdbeek
date Fri, 25 Sep 2015 12:27:07 -0400
parents 69288de0e2f4
children aabb60d93e4a
comparison
equal deleted inserted replaced
3:69288de0e2f4 4:9b27d2331ce2
2 <tool_dependency> 2 <tool_dependency>
3 <package name="ascp" version="3"> 3 <package name="ascp" version="3">
4 <repository changeset_revision="e053dbdb5302" name="package_ascp_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="e053dbdb5302" name="package_ascp_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="ncbi_vdb" version="2.5.2"> 6 <package name="ncbi_vdb" version="2.5.2">
7 <repository changeset_revision="5876ab88600e" name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="a20af718e248" name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="sra_toolkit" version="2.5.2"> 9 <package name="sra_toolkit" version="2.5.2">
10 <install version="1.0"> 10 <install version="1.0">
11 <actions> 11 <actions>
12 <action target_filename="sra-tools-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action> 12 <action target_filename="sra-tools-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action>
13 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
14 <repository changeset_revision="5876ab88600e" name="package_ncbi_vdb_2_5_2" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="a20af718e248" name="package_ncbi_vdb_2_5_2" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
15 <package name="ncbi_vdb" version="2.5.2" /> 15 <package name="ncbi_vdb" version="2.5.2" />
16 </repository> 16 </repository>
17 <repository changeset_revision="b0e9867f0dfb" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="c9b972613908" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
18 <package name="ngs_sdk" version="1.1.3" /> 18 <package name="ngs_sdk" version="1.1.3" />
19 </repository> 19 </repository>
20 </action> 20 </action>
21 <action type="autoconf"> 21 <action type="autoconf">
22 --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build 22 --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build