Mercurial > repos > mvdbeek > package_r_3_2_2

comparison tool_dependencies.xml @ 0:a8d93b065b4e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_2 commit b07fb0cfe8300ce810ba76417deeda88680e828f-dirty
author mvdbeek
date Thu, 08 Oct 2015 10:38:29 -0400
parents
children 82df1a78cc7e
comparison
equal deleted inserted replaced
-1:000000000000 0:a8d93b065b4e
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="3.2.2">
4 <install version="1.0">
5 <actions_group>
6 <!--
7 <actions architecture="x86_64" os="linux">
8 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.2.1-Linux-x86_64.tar.gz</action>
9 <action type="move_directory_files">
10 <source_directory>.</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action>
13 <action type="set_environment">
14 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>
15 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>
16 </action>
17 </actions>
18 -->
19 <actions>
20 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.2.tar.gz</action>
21 <package name="atlas" version="3.10.2">
22 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package>
24 <package name="readline" version="6.3">
25 <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
26 </package>
27 <package name="libpng" version="1.6.7">
28 <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
29 </package>
30 <package name="pixman" version="0.32.6">
31 <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
32 </package>
33 <package name="freetype" version="2.5.2">
34 <repository changeset_revision="55f81025bcb0" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
35 </package>
36 <package name="ncurses" version="6.0">
37 <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
38 </package>
39 <package name="fontconfig" version="2.11.1">
40 <repository changeset_revision="e1df54930f90" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
41 </package>
42 <action type="set_environment_for_install">
43 <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
44 <package name="readline" version="6.3" />
45 </repository>
46 <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
47 <package name="libpng" version="1.6.7" />
48 </repository>
49 <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
50 <package name="pixman" version="0.32.6" />
51 </repository>
52 <repository changeset_revision="55f81025bcb0" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
53 <package name="freetype" version="2.5.2" />
54 </repository>
55 <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
56 <package name="ncurses" version="6.0" />
57 </repository>
58 <repository changeset_revision="e1df54930f90" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
59 <package name="fontconfig" version="2.11.1" />
60 </repository>
61 </action>
62 <action type="shell_command">
63 export LDFLAGS="-L$LIBPNG_LIB_PATH -L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" &amp;&amp;
64 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" &amp;&amp;
65 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &amp;&amp;
66 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &amp;&amp;
67 export LDFLAGS="$LDFLAGS -Wl,-rpath,$LIBPNG_LIB_PATH" &amp;&amp;
68 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &amp;&amp;
69 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FONTCONFIG_LIB_PATH" &amp;&amp;
70 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH &amp;&amp;
71 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH &amp;&amp;
72 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH &amp;&amp;
73 ./configure --with-tcltk \
74 --with-blas \
75 --with-lapack \
76 --with-readline \
77 --with-libpng \
78 --without-x \
79 --enable-R-shlib \
80 --disable-R-framework \
81 --libdir=$INSTALL_DIR/lib \
82 --prefix=$INSTALL_DIR
83 </action>
84 <action type="make_install" />
85 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
86 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
87 </actions>
88 <action type="set_environment">
89 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
90 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
91 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
92 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
93 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
94 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
95 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
96 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
97 <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
98 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
99 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
100 </action>
101 </actions_group>
102 </install>
103 <readme>
104 The precompiled versions of this package were built 2015-07-27.
105 R is a free software environment for statistical computing and graphics.
106 NOTE: See custom compilation options above.
107 </readme>
108 </package>
109 </tool_dependency>