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planemo upload commit 92d32947393757598262fbaed175b2c6fd84c181
author mvdbeek
date Fri, 25 Sep 2015 13:18:33 -0400
parents a20af718e248
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="ngs_sdk" version="1.1.3">
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4 <repository changeset_revision="a00c9a1db096" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="ncbi_vdb" version="2.5.2">
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7 <install version="1.0">
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8 <actions>
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9 <action type="set_environment_for_install">
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10 <repository changeset_revision="a00c9a1db096" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
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11 <package name="ngs_sdk" version="1.1.3" />
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12 </repository>
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13 </action>
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14 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_file">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
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15 <action type="shell_command">
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16 tar -xf ncbi-vdb-2.5.2.tar.gz
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17 </action>
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18 <action type="change_directory">ncbi-vdb-2.5.2</action>
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19 <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
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20 <action type="move_directory_files">
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21 <source_directory>.</source_directory>
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22 <destination_directory>$INSTALL_DIR/</destination_directory>
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23 </action>
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24 <action type="set_environment">
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25 <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable>
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26 </action>
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27 </actions>
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28 </install>
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29 <readme>
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30 ncbi-vdb, required for sra-tools package.
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31 </readme>
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32 </package>
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33 </tool_dependency>