Mercurial > repos > mvdbeek > package_ascp

view tool_dependencies.xml @ 1:b71359e86b6b draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Fri, 14 Aug 2015 09:48:23 -0400
parents aa548b3949bc
children 2d95eeda48a4
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line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="aspc" version="3.6.0.106805">
        <install version="1.0">
            <actions>
<!--                <action type="download_by_url">http://download.asperasoft.com/download/sw/connect/3.6.0/AsperaConnectInstaller-3.6.0.106805.dmg</action> -->
                <action type="download_by_url">https://bitbucket.org/mvdbeek/galaxy_downloads/downloads/AsperaConnectInstaller-3.6.0.106805.dmg</action>
                <action type="shell_command">hdiutil attach -mountpoint install AsperaConnectInstaller-3.6.0.106805.dmg</action>
                <action type="shell_command">pkgutil --expand install/AsperaConnectInstaller.pkg extract</action>
                <action type="shell_command">cat extract|AsperaConnect.pkg/Payload | gzip -d - | cpio -id</action>
                <action type="shell_command">hdiutil detach install</action>
                <action type="move_directory_files">
                    <source_directory>Applications/Aspera Connect.app/Contents/Resources/</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            This tool dependency definition downloads and installs the aspera connect client, used for accelerating
            ncbi sra downloads.
        </readme>
    </package>
</tool_dependency>