# HG changeset patch
# User mvdbeek
# Date 1458741519 14400
# Node ID ee37732ac2699e7c64556c657128149ab8bd4c7c
# Parent  18772b1eb16aa24c2cbe8de1e68efd74f6d806e0
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mismatch_frequencies commit 0beb86e6a562c0dad52afdc0f047b3887ad9ce8e-dirty

diff -r 18772b1eb16a -r ee37732ac269 mismatch_frequencies.xml
--- a/mismatch_frequencies.xml	Mon Jun 29 05:52:19 2015 -0400
+++ b/mismatch_frequencies.xml	Wed Mar 23 09:58:39 2016 -0400
@@ -1,4 +1,4 @@
-<tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.0.9" hidden="false" >
+<tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.1.0" hidden="false" >
   <description>Analyze mismatch frequencies in BAM/SAM alignments</description>
   <requirements>
     <requirement type="package" version="0.7.7">pysam</requirement>
@@ -11,7 +11,7 @@
 		#end for
 		--name 
 		#for i in $rep
-			"$i.input_file.name"
+			"$i.input_file.element_identifier"
 		#end for
 		 --output_pdf $output_pdf --output_tab $output_tab --min $min_length --max $max_length
                  --n_mm $number_of_mismatches
diff -r 18772b1eb16a -r ee37732ac269 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 29 05:52:19 2015 -0400
+++ b/tool_dependencies.xml	Wed Mar 23 09:58:39 2016 -0400
@@ -4,9 +4,9 @@
         <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="pandas" version="0.14.1">
-        <repository changeset_revision="5b75510426f3" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="045c4645abdf" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="matplotlib" version="1.2.1">
-        <repository changeset_revision="55a75739919b" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="8096e96d5076" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>