Mercurial > repos > mvdbeek > mismatch_frequencies

diff test-data/mismatch.tab @ 7:270681625775

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add help text and fix for skipping the beginning/end of reads aligned in reverse orientation.
author mvdbeek
date Wed, 28 Jan 2015 13:12:56 +0100
parents a7bf987b8cc4
children
line wrap: on
line diff
--- a/test-data/mismatch.tab	Tue Jan 27 12:30:07 2015 -0500
+++ b/test-data/mismatch.tab	Wed Jan 28 13:12:56 2015 +0100
@@ -1,3 +1,3 @@
-library	readsize	A to C	A to G	A to T	C to A	C to G	C to T	G to A	G to C	G to T	T to A	T to C	T to G	total_mapped
+library	readsize	A to C	A to G	A to T	C to A	C to G	C to T	G to A	G to C	G to T	T to A	T to C	T to G	total valid reads
 3mismatches_ago2ip_s2.bam	21	31	5484	69	25	40	137	156	109	188	51	196	29	43881
 3mismatches_ago2ip_ovary.bam	21	293	879	411	452	231	872	845	191	473	384	818	324	138649