Mercurial > repos > mvdbeek > mismatch_frequencies

comparison mismatch_frequencies.xml @ 17:deac50041967

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Uploaded
author mvdbeek
date Wed, 01 Apr 2015 08:35:11 -0400
parents a86213925f14
children e3d950e52e38
comparison
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16:a86213925f14 17:deac50041967
1 <tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.0.6" hidden="false" > 1 <tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.0.6" hidden="false" >
2 <description>Analyze mismatch frequencies in BAM/SAM alignments</description> 2 <description>Analyze mismatch frequencies in BAM/SAM alignments</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.7.7">pysam</requirement> 4 <requirement type="package" version="0.7.7">pysam</requirement>
5 <requirement type="package" version="0.14.1">pandas</requirement> 5 <requirement type="package" version="0.14.1">pandas</requirement>
6 <requirement type="package" version="1.2">matplotlib</requirement> 6 <requirement type="package" version="1.2.1">matplotlib</requirement>
7 </requirements> 7 </requirements>
8 <command interpreter="python">mismatch_frequencies.py --input 8 <command interpreter="python">mismatch_frequencies.py --input
9 #for i in $rep 9 #for i in $rep
10 "$i.input_file" 10 "$i.input_file"
11 #end for 11 #end for