# HG changeset patch
# User mvdbeek
# Date 1529084031 14400
# Node ID dd61761307ca1ea7016adc0eae91be830452777a
# Parent  d6541171175c9d0394778c55b12b429dca59d6b9
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0437e9e56f0af2ccfb5f119b0f290109807ed9b0-dirty

diff -r d6541171175c -r dd61761307ca igv_make_screenshots.xml
--- a/igv_make_screenshots.xml	Fri Jun 15 13:11:56 2018 -0400
+++ b/igv_make_screenshots.xml	Fri Jun 15 13:33:51 2018 -0400
@@ -28,6 +28,7 @@
 #for $i, $inputsection in enumerate($inputfiles):
     @PATH@
     ln -fs '$inputsection.input' '$path' &&
+    sed -i.bak -e "s|\"$path\"|\"\$PWD/$path\"|g" '$igv_session' &&
     #if $inputsection.input.is_of_type('bam')
         ln -fs $inputsection.input.metadata.bam_index '$path'.bai &&
     #end if