# HG changeset patch
# User mvdbeek
# Date 1501262340 14400
# Node ID bfd72b90dbb21742023914dd70ccdda60dd2083b
# Parent  817db6799e961c9113215880e7d06a89372471aa
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 1ddb87e95baeea2a4ee9b95930da6e0927fb7ff7-dirty

diff -r 817db6799e96 -r bfd72b90dbb2 igv_make_screenshots.xml
--- a/igv_make_screenshots.xml	Fri Jul 28 12:56:38 2017 -0400
+++ b/igv_make_screenshots.xml	Fri Jul 28 13:19:00 2017 -0400
@@ -4,7 +4,11 @@
         <requirement type="package" version="2.3.93">igv</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        ln -s '$genome_source.genome' genome.fa &&
+        #if $genome_source.genome_source == 'history':
+            ln -s '$genome_source.genome' genome.fa &&
+        #else:
+            ln -s '$genome_source.genome.fields.path' genome.fa &&
+        #end if
         samtools faidx genome.fa &&
         sed -i.bak -e "s|\"genome.fa\"|\"\$PWD/genome.fa\"|g" '$igv_session' &&
         #for $i, $inputsection in enumerate($inputfiles):