# HG changeset patch
# User mvdbeek
# Date 1529082292 14400
# Node ID 676591c44f643f379801b24c97e697f9b88207b3
# Parent  6f98222928ee9eb1b85b143fd43f8dd3f5d6a884
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0437e9e56f0af2ccfb5f119b0f290109807ed9b0-dirty

diff -r 6f98222928ee -r 676591c44f64 igv_make_screenshots.xml
--- a/igv_make_screenshots.xml	Fri Jun 15 13:01:15 2018 -0400
+++ b/igv_make_screenshots.xml	Fri Jun 15 13:04:52 2018 -0400
@@ -5,9 +5,9 @@
 #set $user_id = str($__app__.security.encode_id($__user_id__))
 #set $galaxy_url = $__app__.config.galaxy_infrastructure_url
 #set $file_ext = $inputsection.input.extension
-#set $igv_ext = $ext if $file_ext != "gff3" else "gff"
+#set $igv_ext = $file_ext if $file_ext != "gff3" else "gff"
 #set $element_identifier = $inputsection.input.element_identifier
-#set $display_link = "{galaxy_url}/display_application/{dataset_id}/igv_{ext}/local_default/None/data/galaxy_{dataset_id}.{file_ext}".format(galaxy_url=galaxy_url, dataset_id=dataset_id, igv_ext=igv_ext, file_ext=file_ext, user_id=user_id)
+#set $display_link = "{galaxy_url}/display_application/{dataset_id}/igv_{igv_ext}/local_default/None/data/galaxy_{dataset_id}.{file_ext}".format(galaxy_url=galaxy_url, dataset_id=dataset_id, igv_ext=igv_ext, file_ext=file_ext, user_id=user_id)
 ]]></token>
         <token name="@PATH@"><![CDATA[#set $path="%s.%s.%s" % ($i, $inputsection.input.element_identifier, $inputsection.input.extension)]]></token>
     </macros>