# HG changeset patch
# User mvdbeek
# Date 1499086408 14400
# Node ID 54bc6c6d667c0eeaaa9a0d24ff4f0257e20a8ee0
# Parent  20cc4cc902f44380cbebe2240022faa4270561c9
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty

diff -r 20cc4cc902f4 -r 54bc6c6d667c igv_make_screenshots.xml
--- a/igv_make_screenshots.xml	Mon Jul 03 08:51:51 2017 -0400
+++ b/igv_make_screenshots.xml	Mon Jul 03 08:53:28 2017 -0400
@@ -5,7 +5,7 @@
     <command detect_errors="exit_code"><![CDATA[
         #for $inputsection in $inputfiles
             #set $path="%s.%s" % ($inputsection.input.element_identifier, $inputsection.input.extension)
-            sed -i.bak -e 's|$path|\$PWD/$path|g' '$igv_session' &&
+            sed -i.bak -e "s|$path|\$PWD/$path|g" '$igv_session' &&
             ln -fs $inputsection.input $path &&
             #if $inputsection.input.is_of_type('bam')
                 ln -fs $inputsection.input.metadata.bam_index '$path'.bai &&