# HG changeset patch
# User mvdbeek
# Date 1499086311 14400
# Node ID 20cc4cc902f44380cbebe2240022faa4270561c9
# Parent  a4877f60773a1ad7127d9c44293734b96f6296cc
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty

diff -r a4877f60773a -r 20cc4cc902f4 igv_make_screenshots.xml
--- a/igv_make_screenshots.xml	Mon Jul 03 08:51:28 2017 -0400
+++ b/igv_make_screenshots.xml	Mon Jul 03 08:51:51 2017 -0400
@@ -5,7 +5,7 @@
     <command detect_errors="exit_code"><![CDATA[
         #for $inputsection in $inputfiles
             #set $path="%s.%s" % ($inputsection.input.element_identifier, $inputsection.input.extension)
-            sed -i.bak -e 's|$path|$PWD/$path|g' '$igv_session' &&
+            sed -i.bak -e 's|$path|\$PWD/$path|g' '$igv_session' &&
             ln -fs $inputsection.input $path &&
             #if $inputsection.input.is_of_type('bam')
                 ln -fs $inputsection.input.metadata.bam_index '$path'.bai &&