view xvfb_igv.py @ 31:474837e086cc draft

planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit cfa400e89cb4bb8de9ca2ca75ee2e50b77c9a610
author mvdbeek
date Sun, 20 Jan 2019 13:30:21 -0500
parents 1100d5a77c4d
children
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import os
import subprocess
import sys

import xvfbwrapper


def take_screenshots(igv_script, preferences_file, screensize):
    width, height = screensize.split(',')
    with xvfbwrapper.Xvfb(width=width, height=height) as xvfb:
        exit_code = subprocess.call(['igv', '-g', 'genome.fa', '-o', preferences_file, '--batch', igv_script], env=os.environ.copy())
    sys.exit(exit_code)


if __name__ == '__main__':
    take_screenshots(sys.argv[1], sys.argv[2], sys.argv[3])