Mercurial > repos > mvdbeek > igv_take_screenshots
view xvfb_igv.py @ 31:474837e086cc draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit cfa400e89cb4bb8de9ca2ca75ee2e50b77c9a610
author | mvdbeek |
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date | Sun, 20 Jan 2019 13:30:21 -0500 |
parents | 1100d5a77c4d |
children |
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import os import subprocess import sys import xvfbwrapper def take_screenshots(igv_script, preferences_file, screensize): width, height = screensize.split(',') with xvfbwrapper.Xvfb(width=width, height=height) as xvfb: exit_code = subprocess.call(['igv', '-g', 'genome.fa', '-o', preferences_file, '--batch', igv_script], env=os.environ.copy()) sys.exit(exit_code) if __name__ == '__main__': take_screenshots(sys.argv[1], sys.argv[2], sys.argv[3])