Mercurial > repos > mvdbeek > igv_take_screenshots

diff xvfb_igv.py @ 13:1100d5a77c4d draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 1ddb87e95baeea2a4ee9b95930da6e0927fb7ff7-dirty
author mvdbeek
date Fri, 28 Jul 2017 12:47:05 -0400
parents 64eb1ffd7872
children
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--- a/xvfb_igv.py	Mon Jul 03 12:40:16 2017 -0400
+++ b/xvfb_igv.py	Fri Jul 28 12:47:05 2017 -0400
@@ -8,7 +8,7 @@
 def take_screenshots(igv_script, preferences_file, screensize):
     width, height = screensize.split(',')
     with xvfbwrapper.Xvfb(width=width, height=height) as xvfb:
-        exit_code = subprocess.call(['igv', '-o', preferences_file, '--batch', igv_script], env=os.environ.copy())
+        exit_code = subprocess.call(['igv', '-g', 'genome.fa', '-o', preferences_file, '--batch', igv_script], env=os.environ.copy())
     sys.exit(exit_code)