Mercurial > repos > mvdbeek > igv_take_screenshots

comparison igv_make_screenshots.xml @ 27:676591c44f64 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0437e9e56f0af2ccfb5f119b0f290109807ed9b0-dirty
author mvdbeek
date Fri, 15 Jun 2018 13:04:52 -0400
parents 6f98222928ee
children d6541171175c
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26:6f98222928ee 27:676591c44f64
3 <token name="@DISPLAY_LINK@"><![CDATA[ 3 <token name="@DISPLAY_LINK@"><![CDATA[
4 #set $dataset_id = str($__app__.security.encode_id($inputsection.input.dataset.id)) 4 #set $dataset_id = str($__app__.security.encode_id($inputsection.input.dataset.id))
5 #set $user_id = str($__app__.security.encode_id($__user_id__)) 5 #set $user_id = str($__app__.security.encode_id($__user_id__))
6 #set $galaxy_url = $__app__.config.galaxy_infrastructure_url 6 #set $galaxy_url = $__app__.config.galaxy_infrastructure_url
7 #set $file_ext = $inputsection.input.extension 7 #set $file_ext = $inputsection.input.extension
8 #set $igv_ext = $ext if $file_ext != "gff3" else "gff" 8 #set $igv_ext = $file_ext if $file_ext != "gff3" else "gff"
9 #set $element_identifier = $inputsection.input.element_identifier 9 #set $element_identifier = $inputsection.input.element_identifier
10 #set $display_link = "{galaxy_url}/display_application/{dataset_id}/igv_{ext}/local_default/None/data/galaxy_{dataset_id}.{file_ext}".format(galaxy_url=galaxy_url, dataset_id=dataset_id, igv_ext=igv_ext, file_ext=file_ext, user_id=user_id) 10 #set $display_link = "{galaxy_url}/display_application/{dataset_id}/igv_{igv_ext}/local_default/None/data/galaxy_{dataset_id}.{file_ext}".format(galaxy_url=galaxy_url, dataset_id=dataset_id, igv_ext=igv_ext, file_ext=file_ext, user_id=user_id)
11 ]]></token> 11 ]]></token>
12 <token name="@PATH@"><![CDATA[#set $path="%s.%s.%s" % ($i, $inputsection.input.element_identifier, $inputsection.input.extension)]]></token> 12 <token name="@PATH@"><![CDATA[#set $path="%s.%s.%s" % ($i, $inputsection.input.element_identifier, $inputsection.input.extension)]]></token>
13 </macros> 13 </macros>
14 <requirements> 14 <requirements>
15 <requirement type="package" version="0.2.9">xvfbwrapper</requirement> 15 <requirement type="package" version="0.2.9">xvfbwrapper</requirement>