Mercurial > repos > mvdbeek > igv_take_screenshots

comparison test-data/igv_session.xml @ 31:474837e086cc draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit cfa400e89cb4bb8de9ca2ca75ee2e50b77c9a610
author mvdbeek
date Sun, 20 Jan 2019 13:30:21 -0500
parents 1100d5a77c4d
children
comparison
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30:9d6b4d2ca187 31:474837e086cc
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?> 1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <Session genome="/Users/mvandenb/src/galaxy/database/jobs_directory/000/350/working/genome.fa" hasGeneTrack="false" hasSequenceTrack="true" version="8"> 2 <Session genome="dm6" hasGeneTrack="true" hasSequenceTrack="true" version="8">
3 <Resources> 3 <Resources>
4 <Resource path="/Users/mvandenb/src/galaxy/database/jobs_directory/000/350/working/0.rover_corrected.bam.bam"/> 4 <Resource path="http://localhost:8080/display_application/d836242eec778a25/igv_bam/local_default/None/data/galaxy_d836242eec778a25.bam"/>
5 </Resources> 5 </Resources>
6
7
6 <Panel height="300" name="Panelrover_corrected.bam" width="1920"> 8 <Panel height="300" name="Panelrover_corrected.bam" width="1920">
7 <Track altColor="0,0,178" autoScale="true" color="175,175,175" colorScale="ContinuousColorScale;0.0;10.0;255,255,255;175,175,175" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="0.rover_corrected.bam.bam_coverage" name="rover_corrected.bam Coverage" showReference="false" snpThreshold="0.2" sortable="true" visible="true"> 9 <Track altColor="0,0,178" autoScale="true" color="175,175,175" colorScale="ContinuousColorScale;0.0;10.0;255,255,255;175,175,175" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="http://localhost:8080/display_application/d836242eec778a25/igv_bam/local_default/None/data/galaxy_d836242eec778a25.bam_coverage" name="rover_corrected.bam Coverage" showReference="false" snpThreshold="0.2" sortable="true" visible="true">
8 <DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="10.0" minimum="0.0" type="LINEAR"/> 10 <DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="10.0" minimum="0.0" type="LINEAR"/>
9 </Track> 11 </Track>
10 <Track altColor="0,0,178" autoScale="false" color="0,0,178" displayMode="EXPANDED" featureVisibilityWindow="-1" fontSize="10" id="/Users/mvandenb/src/galaxy/database/jobs_directory/000/350/working/0.rover_corrected.bam.bam" name="rover_corrected.bam" sortable="true" visible="true"> 12 <Track altColor="0,0,178" autoScale="false" color="0,0,178" displayMode="EXPANDED" featureVisibilityWindow="-1" fontSize="10" id="http://localhost:8080/display_application/d836242eec778a25/igv_bam/local_default/None/data/galaxy_d836242eec778a25.bam" name="rover_corrected.bam" sortable="true" visible="true">
11 <RenderOptions colorByTag="CD" colorOption="TAG" flagUnmappedPairs="false" groupByOption="NONE" groupByTag="BR" linkByTag="READNAME" linkedReads="false" maxInsertSize="1000" minInsertSize="50" quickConsensusMode="false" shadeBasesOption="QUALITY" shadeCenters="true" showAllBases="false" sortByTag="" viewPairs="false"/> 13 <RenderOptions colorByTag="CD" colorOption="TAG" flagUnmappedPairs="false" groupByOption="NONE" groupByTag="BR" linkByTag="READNAME" linkedReads="false" maxInsertSize="1000" minInsertSize="50" quickConsensusMode="false" shadeBasesOption="QUALITY" shadeCenters="true" showAllBases="false" sortByTag="" viewPairs="false"/>
12 </Track> 14 </Track>
13 </Panel> 15 </Panel>
14 <Panel height="186" name="FeaturePanel" width="1920"> 16 <Panel height="186" name="FeaturePanel" width="1920">
15 <Track altColor="0,0,178" autoScale="false" color="0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="Reference sequence" name="Reference sequence" sortable="false" visible="true"/> 17 <Track altColor="0,0,178" autoScale="false" color="0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="Reference sequence" name="Reference sequence" sortable="false" visible="true"/>