Mercurial > repos > mvdbeek > igv_take_screenshots

comparison igv_make_screenshots.xml @ 18:46e42201f2e6 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 1ddb87e95baeea2a4ee9b95930da6e0927fb7ff7-dirty
author mvdbeek
date Fri, 28 Jul 2017 13:27:57 -0400
parents bfd72b90dbb2
children fd2d19ae2648
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17:bfd72b90dbb2 18:46e42201f2e6
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.2.9">xvfbwrapper</requirement> 3 <requirement type="package" version="0.2.9">xvfbwrapper</requirement>
4 <requirement type="package" version="2.3.93">igv</requirement> 4 <requirement type="package" version="2.3.93">igv</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 #if $genome_source.genome_source == 'history': 7 #if $genome_source.input_type_selector == 'history':
8 ln -s '$genome_source.genome' genome.fa && 8 ln -s '$genome_source.genome' genome.fa &&
9 #else: 9 #else:
10 ln -s '$genome_source.genome.fields.path' genome.fa && 10 ln -s '$genome_source.genome.fields.path' genome.fa &&
11 #end if 11 #end if
12 samtools faidx genome.fa && 12 samtools faidx genome.fa &&