Mercurial > repos > mvdbeek > igv_take_screenshots

annotate xvfb_igv.py @ 9:c357862a2927 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
author mvdbeek
date Mon, 03 Jul 2017 11:36:19 -0400
parents d828cf6bff42
children 64eb1ffd7872
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d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
1 import os
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
2 import subprocess
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
3 import sys
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
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d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
5 import xvfbwrapper
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
6
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
7
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
8 def take_screenshots(igv_script, screensize):
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
9 width, height = screensize.split(',')
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
10 with xvfbwrapper.Xvfb(width=width, height=height) as xvfb:
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
11 exit_code = subprocess.call(['igv', '--batch', igv_script], env=os.environ.copy())
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
12 sys.exit(exit_code)
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
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d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
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d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
diff changeset
15 if __name__ == '__main__':
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
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16 take_screenshots(sys.argv[1], sys.argv[2])
d828cf6bff42 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
mvdbeek
parents:
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