Mercurial > repos > mvdbeek > get_reference_fasta
diff get_reference_fasta.xml @ 0:c15a93753e71 draft
Uploaded
author | mvdbeek |
---|---|
date | Tue, 28 Apr 2015 09:38:56 -0400 |
parents | |
children | d79153e68957 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_reference_fasta.xml Tue Apr 28 09:38:56 2015 -0400 @@ -0,0 +1,29 @@ +<tool id="get_fasta_reference" name="get fasta reference" version="0.1.0"> +<description>Obtain reference genome sequence</description> + <stdio> + <exit_code range="1:" /> + </stdio> + <command><![CDATA[ + cat "$pre_installed_fasta.fields.path" > "$output" + ]]></command> + <inputs> + <param help="if you wish to have your fasta sequence listed contact instance administrator" label="Select a fasta sequence" name="pre_installed_fasta" type="select"> + <options from_data_table="all_fasta"/> + </param> + </inputs> + <outputs> + <data name="output" format="fasta" /> + </outputs> + <tests> + <test> + <param name="input" value="EcR_USP_224.fa"/> + <output name="output" file="EcR_USP_224.fa"/> + </test> + </tests> + <help><![CDATA[ + +Places the reference genome sequence in the current history. +Useful for sharing purposes or tools that work directly on fasta files. + + ]]></help> +</tool>