Mercurial > repos > mvdbeek > generate_sliding_windows

comparison generate_sliding_windows.xml @ 2:22dc61eaed53 draft

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author mvdbeek
date Wed, 15 Apr 2015 06:38:06 -0400
parents 10a0153b74d1
children 3dcce035dd6c
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1:10a0153b74d1 2:22dc61eaed53
6 <stdio> 6 <stdio>
7 <exit_code range="1:" /> 7 <exit_code range="1:" />
8 </stdio> 8 </stdio>
9 9
10 <command interpreter="python"><![CDATA[ 10 <command interpreter="python"><![CDATA[
11 generate_sliding_windows.py --input "$input1" --output "$output1" --window $window --step $step 11 generate_sliding_windows.py --input "$input" --output "$output1" --window $window --step $step
12 ]]></command> 12 ]]></command>
13 <inputs> 13 <inputs>
14 <param type="data" name="input" label="input fasta file" help="select fasta file for which you wish to generate a multi-fasta file in a sliding window fashion" format="fasta" /> 14 <param type="data" name="input" label="input fasta file" help="select fasta file for which you wish to generate a multi-fasta file in a sliding window fashion" format="fasta" />
15 <param type="integer" name="window" value="21" min="1" label="window size" help="Specifiy the size of the windows that should be generated"/> 15 <param type="integer" name="window" value="21" min="1" label="window size" help="Specifiy the size of the windows that should be generated"/>
16 <param type="integer" name="step" value="21" min="1" label="step size" help="Specify the distance with which windows should be spaced apart."/> 16 <param type="integer" name="step" value="21" min="1" label="step size" help="Specify the distance with which windows should be spaced apart."/>