Mercurial > repos > mvdbeek > fermikit_variants

comparison test-data/sv.vcf @ 0:38838353adb4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit commit 47795b03c956d0f239aede8e27d2aa4e3c4c1d27
author mvdbeek
date Fri, 30 Dec 2016 10:26:16 -0500
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-1:000000000000 0:38838353adb4
1 ##fileformat=VCFv4.1
2 ##source=htsbox-abreak-r327
3 ##reference=/tmp/tmpIcvwsb/files/000/dataset_2.dat
4 ##contig=<ID=11_1910000_1940000,length=30001>
5 ##ALT=<ID=DEL,Description="Deletion">
6 ##ALT=<ID=INS,Description="Insertion">
7 ##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="SV length">
8 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
9 ##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate of this variant">
10 ##INFO=<ID=QGAP,Number=1,Type=Integer,Description="Length of gap on the query sequence">
11 ##INFO=<ID=MINMAPQ,Number=1,Type=Integer,Description="Min flanking mapping quality">
12 ##INFO=<ID=MINSC,Number=1,Type=Integer,Description="Min flanking alignment score">
13 ##INFO=<ID=MINTIPQ,Number=1,Type=Integer,Description="Min quality/depth flanking the break point">
14 ##FILTER=<ID=LowSupp,Description="MINTIPQ < 10">
15 #CHROM POS ID REF ALT QUAL FILTER INFO
16 11_1910000_1940000 5276 . C <DEL> 30 . SVTYPE=DEL;END=26956;SVLEN=21678;QGAP=3;MINMAPQ=60;MINSC=793;MINTIPQ=23