Mercurial > repos > mvdbeek > docker_scriptrunner

diff dockerfiles/r-bioperl-python/Dockerfile @ 10:ed7cf3f35799 draft

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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit d8d8e8e063698813c9eb646e0df7d93118fd0520
author mvdbeek
date Sat, 09 Jul 2016 07:12:40 -0400
parents 77dca93454b7
children cf6e2bba9714
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--- a/dockerfiles/r-bioperl-python/Dockerfile	Sat Jul 09 05:07:15 2016 -0400
+++ b/dockerfiles/r-bioperl-python/Dockerfile	Sat Jul 09 07:12:40 2016 -0400
@@ -7,8 +7,7 @@
 
 MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com
 
-USER galaxy
-RUN bash -c ". activate default && \
-    conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy"
 USER root
-RUN chown -R galaxy:users /home/galaxy && chmod g=rwx /home/galaxy
+RUN su - galaxy -c 'bash -c ". /home/galaxy/conda/bin/activate default && \
+    conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy"' && \
+    chown -R galaxy:users /home/galaxy && chmod g=rwx /home/galaxy