--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dockerfiles/scriptrunner/Dockerfile	Fri Jul 08 15:09:10 2016 -0400
@@ -0,0 +1,34 @@
+# Script runner base image
+#
+# VERSION       0.3
+# This Dockerfile is the base system for executing scripts with the docker scriptrunner.
+
+FROM toolshed/requirements
+
+MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com
+
+# make sure the package repository is up to date
+ENV DEBIAN_FRONTEND noninteractive
+RUN apt-get -qq update
+
+# Install all requirements that are recommend by the Galaxy project
+RUN apt-get install -y --no-install-recommends imagemagick libfreetype6-dev wget curl \
+libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \
+libpcre3-dev libbz2-dev libx11-dev 
+
+RUN useradd galaxy --create-home --uid 1450 && \
+    chown -R galaxy:galaxy /home/galaxy/
+USER galaxy
+WORKDIR /home/galaxy
+ENV CONDA_PREFIX="/home/galaxy/conda" \
+    PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH"
+
+RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh 
+RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
+RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \
+    conda config --add channels r && \
+    conda config --add channels bioconda && \
+    conda config --add channels iuc && \
+    . activate default && \
+    conda install ghostscript"
+CMD /bin/bash -c ". activate default && exec /bin/bash"