Mercurial > repos > mvdbeek > docker_scriptrunner

comparison dockerfiles/scriptrunner/Dockerfile @ 14:5a3652633289 draft default tip

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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit dded837d19aeb3f06b84e5076282cedeeaf713fa
author mvdbeek
date Sun, 22 Jul 2018 13:37:34 -0400
parents cf6e2bba9714
children
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13:cf6e2bba9714 14:5a3652633289
24 ENV CONDA_PREFIX="/home/galaxy/conda" \ 24 ENV CONDA_PREFIX="/home/galaxy/conda" \
25 PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH" 25 PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH"
26 26
27 RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh 27 RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh
28 RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh 28 RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
29 RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \ 29 RUN bash -c "conda create -y -q -c bioconda --name default samtools bcftools && \
30 conda config --add channels r && \ 30 conda config --add channels conda-forge && \
31 conda config --add channels bioconda && \ 31 conda config --add channels bioconda && \
32 conda config --add channels iuc && \ 32 conda config --add channels iuc && \
33 . activate default && \ 33 . activate default && \
34 conda install ghostscript coreutils" 34 conda install ghostscript coreutils"
35 USER root 35 USER root