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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 87a8f2ec706b231b2db20a9433efa34d967d35cf
author mvdbeek
date Fri, 08 Jul 2016 17:31:44 -0400
parents e1f5be390bc3
children 77dca93454b7
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5:db65a7426ac7 6:b28d3445992b
14 # Install all requirements that are recommend by the Galaxy project 14 # Install all requirements that are recommend by the Galaxy project
15 RUN apt-get install -y --no-install-recommends imagemagick libfreetype6-dev wget curl \ 15 RUN apt-get install -y --no-install-recommends imagemagick libfreetype6-dev wget curl \
16 libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \ 16 libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \
17 libpcre3-dev libbz2-dev libx11-dev 17 libpcre3-dev libbz2-dev libx11-dev
18 18
19 RUN useradd galaxy --create-home --uid 1450 && \ 19 RUN mkdir /var/home && \
20 chown -R galaxy:galaxy /home/galaxy/ 20 useradd galaxy --create-home --home-dir /var/home/galaxy --uid 1450 && \
21 chown -R galaxy:galaxy /var/home/galaxy/
21 USER galaxy 22 USER galaxy
22 WORKDIR /home/galaxy 23 WORKDIR /var/home/galaxy
23 ENV CONDA_PREFIX="/home/galaxy/conda" \ 24 ENV CONDA_PREFIX="/var/home/galaxy/conda" \
24 PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH" 25 PATH="/var/home/galaxy/conda/envs/default/bin:/var/home/galaxy/conda/bin:$PATH"
25 26
26 RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh 27 RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh
27 RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh 28 RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
28 RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \ 29 RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \
29 conda config --add channels r && \ 30 conda config --add channels r && \