Mercurial > repos > mvdbeek > docker_scriptrunner

comparison dockerfiles/scriptrunner/Dockerfile @ 9:77dca93454b7 draft

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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 40d6cb5308a36b00495fd6072d867ed2c5a37b3c
author mvdbeek
date Sat, 09 Jul 2016 05:07:15 -0400
parents b28d3445992b
children cf6e2bba9714
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8:1b7f987270a6 9:77dca93454b7
15 RUN apt-get install -y --no-install-recommends imagemagick libfreetype6-dev wget curl \ 15 RUN apt-get install -y --no-install-recommends imagemagick libfreetype6-dev wget curl \
16 libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \ 16 libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \
17 libpcre3-dev libbz2-dev libx11-dev 17 libpcre3-dev libbz2-dev libx11-dev
18 18
19 RUN mkdir /var/home && \ 19 RUN mkdir /var/home && \
20 useradd galaxy --create-home --home-dir /var/home/galaxy --uid 1450 && \ 20 useradd galaxy --create-home --home-dir /home/galaxy --uid 1450 && \
21 chown -R galaxy:galaxy /var/home/galaxy/ 21 chown -R galaxy:galaxy /home/galaxy/
22 USER galaxy 22 USER galaxy
23 WORKDIR /var/home/galaxy 23 WORKDIR /home/galaxy
24 ENV CONDA_PREFIX="/var/home/galaxy/conda" \ 24 ENV CONDA_PREFIX="/home/galaxy/conda" \
25 PATH="/var/home/galaxy/conda/envs/default/bin:/var/home/galaxy/conda/bin:$PATH" 25 PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH"
26 26
27 RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh 27 RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh
28 RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh 28 RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
29 RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \ 29 RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \
30 conda config --add channels r && \ 30 conda config --add channels r && \
31 conda config --add channels bioconda && \ 31 conda config --add channels bioconda && \
32 conda config --add channels iuc && \ 32 conda config --add channels iuc && \
33 . activate default && \ 33 . activate default && \
34 conda install ghostscript" 34 conda install ghostscript"
35 USER root 35 USER root
36 RUN chown -R galaxy:users /home/galaxy && \
37 chmod g=rwx /home/galaxy && \
38 usermod -G users galaxy