# HG changeset patch # User mvdbeek # Date 1446203954 14400 # Node ID 8af6d4ad2f0ab83fcb5a8608659f0301917639f3 # Parent ea5d573d6d4021a3052f40ca88c36448e3d88c0d planemo upload for repository https://github.com/mvdbeek/dapars commit b1b007c561ea6c9db145c88b6b128d66ecd05e24-dirty diff -r ea5d573d6d40 -r 8af6d4ad2f0a dapars.py --- a/dapars.py Fri Oct 30 06:58:57 2015 -0400 +++ b/dapars.py Fri Oct 30 07:19:14 2015 -0400 @@ -41,7 +41,7 @@ help="minimum coverage in each aligment to be considered for determining breakpoints") parser.add_argument("-b", "--breakpoint_bed", required=False, type=argparse.FileType('w'), help="Write bedfile with coordinates of breakpoint positions to supplied path.") - parser.add_argument("-v", "--version", action='version', version='%(prog)s 0.2.0') + parser.add_argument("-v", "--version", action='version', version='%(prog)s 0.2.2') parser.add_argument("-p", "--plot_path", default=None, required=False, type=directory_path, help="If plot_path is specified will write a coverage plot for every UTR in that directory.") parser.add_argument("-html", "--html_file", default=None, required=False, type=argparse.FileType('w'), diff -r ea5d573d6d40 -r 8af6d4ad2f0a dapars.xml --- a/dapars.xml Fri Oct 30 06:58:57 2015 -0400 +++ b/dapars.xml Fri Oct 30 07:19:14 2015 -0400 @@ -1,4 +1,4 @@ - + infer de-novo alternative polyadenylation from rna-seq numpy @@ -6,6 +6,7 @@ matplotlib_1_4_runtime_dependencies matplotlib tabulate + bedtools