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comparison dapars.xml @ 10:c88e64b1c8f5 draft

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planemo upload for repository https://github.com/mvdbeek/dapars commit deab588a5d5ec7022de63a395fbd04e415ba0a42-dirty
author mvdbeek
date Thu, 29 Oct 2015 18:26:32 -0400
parents ad63d21b0b01
children b2e46d8f9487
comparison
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9:ad63d21b0b01 10:c88e64b1c8f5
10 <stdio> 10 <stdio>
11 <exit_code range="1:" /> 11 <exit_code range="1:" />
12 </stdio> 12 </stdio>
13 <command interpreter="python"><![CDATA[ 13 <command interpreter="python"><![CDATA[
14 dapars.py -c $controls 14 dapars.py -c $controls
15 #for $control in $controls:
16 "$control"
17 #end for
15 -t 18 -t
16 #for $t in $treatments: 19 #for $treatment in $treatments:
17 "$t" 20 "$treatment"
18 #end for 21 #end for
19 -u "$utr" 22 -u "$utr"
20 -o "$apa_sites" 23 -o "$apa_sites"
21 -cpu \${GALAXY_SLOTS:-4} 24 -cpu \${GALAXY_SLOTS:-4}
22 --coverage_threshold "$coverage_threshold" 25 --coverage_threshold "$coverage_threshold"