Mercurial > repos > mvdbeek > concatenate_multiple_datasets
diff catWrapper.xml @ 1:1bf1794dfcf6 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/concatenate_multiple_datasets commit 1542edc9d7c2b1e9649c52532a5630e23ac5ceda
author | mvdbeek |
---|---|
date | Fri, 25 Sep 2015 11:07:07 -0400 |
parents | cf750d0edbd8 |
children | 745090cbbf75 |
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--- a/catWrapper.xml Tue Mar 03 05:06:43 2015 -0500 +++ b/catWrapper.xml Fri Sep 25 11:07:07 2015 -0400 @@ -1,11 +1,12 @@ -<tool id="cat_multiple" name="Concatenate multiple datasets" version="0.1"> +<tool id="cat_multiple" name="Concatenate multiple datasets" version="0.2"> <description>tail-to-head</description> - <command interpreter="python"> - catWrapper.py - $out_file1 + <command><![CDATA[ + cat #for $file in $input - $file + "$file" #end for + > "$out_file1" + ]]> </command> <inputs> <param name="input" type="data" label="Concatenate Dataset" multiple="True"/> @@ -21,48 +22,49 @@ </tests> <help> -.. class:: warningmark + .. class:: warningmark -**WARNING:** Be careful not to concatenate datasets of different kinds (e.g., sequences with intervals). This tool does not check if the datasets being concatenated are in the same format. + **WARNING:** Be careful not to concatenate datasets of different kinds (e.g., sequences with intervals). This + tool does not check if the datasets being concatenated are in the same format. ------ + ----- -**What it does** + **What it does** -Concatenates datasets + Concatenates datasets ------ + ----- -**Example** + **Example** -Concatenating Dataset:: + Concatenating Dataset:: - chrX 151087187 151087355 A 0 - - chrX 151572400 151572481 B 0 + + chrX 151087187 151087355 A 0 - + chrX 151572400 151572481 B 0 + -with Dataset1:: + with Dataset1:: - chr1 151242630 151242955 X 0 + - chr1 151271715 151271999 Y 0 + - chr1 151278832 151279227 Z 0 - - -and with Dataset2:: + chr1 151242630 151242955 X 0 + + chr1 151271715 151271999 Y 0 + + chr1 151278832 151279227 Z 0 - - chr2 100000030 200000955 P 0 + - chr2 100000015 200000999 Q 0 + + and with Dataset2:: -will result in the following:: + chr2 100000030 200000955 P 0 + + chr2 100000015 200000999 Q 0 + + + will result in the following:: - chrX 151087187 151087355 A 0 - - chrX 151572400 151572481 B 0 + - chr1 151242630 151242955 X 0 + - chr1 151271715 151271999 Y 0 + - chr1 151278832 151279227 Z 0 - - chr2 100000030 200000955 P 0 + - chr2 100000015 200000999 Q 0 + + chrX 151087187 151087355 A 0 - + chrX 151572400 151572481 B 0 + + chr1 151242630 151242955 X 0 + + chr1 151271715 151271999 Y 0 + + chr1 151278832 151279227 Z 0 - + chr2 100000030 200000955 P 0 + + chr2 100000015 200000999 Q 0 + ------ + ----- -Adapted from the concatenate tool that comes with galaxy. + Adapted from the concatenate tool that comes with galaxy. </help> </tool>