Mercurial > repos > mvdbeek > bam_tag_reads

view test.sh @ 2:d05f883765ba draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bardin-lab/tag_reads/tree/master/galaxy commit deb166021688193b84e799315b08d31518009583
author mvdbeek
date Fri, 10 Feb 2017 13:00:43 -0500
parents 8138277ea0e5
children
line wrap: on
line source

#!/usr/bin/env bash

set -e

if grep -v 'python tag_reads.py' bam_tag_reads.xml
then
    sed -i.bak 's/tag_reads -t/python \$__tool_directory__\/tag_reads.py -t/g' bam_tag_reads.xml
fi
cp ../tag_reads/tag_reads.py .
planemo test --conda_prefix ~/miniconda3