Mercurial > repos > mvdbeek > bam_tag_reads

comparison test.sh @ 1:8138277ea0e5 draft

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planemo upload for repository https://github.com/bardin-lab/tag_reads/tree/master/galaxy commit e4243f5ba5d89a06c1ae68cc49d830f1b6e9cb46
author mvdbeek
date Wed, 08 Feb 2017 03:36:05 -0500
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0:66aa515e360e 1:8138277ea0e5
1 #!/usr/bin/env bash
2
3 set -e
4
5 if grep -v 'python tag_reads.py' bam_tag_reads.xml
6 then
7 sed -i.bak 's/tag_reads -t/python \$__tool_directory__\/tag_reads.py -t/g' bam_tag_reads.xml
8 fi
9 cp ../tag_reads/tag_reads.py .
10 planemo test --conda_prefix ~/miniconda3