Mercurial > repos > mvdbeek > bam_readtagger

changeset 3:e68a225983d5 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit b0627386ac1cc004dc71fc788bf37111213b1fab
author mvdbeek
date Fri, 17 Feb 2017 12:55:47 -0500
parents 865589023a17
children e0b1919b6bd8
files allow_dovetailing.xml bam_readtagger.xml deploy.sh
diffstat 3 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/allow_dovetailing.xml	Fri Feb 17 12:24:49 2017 -0500
+++ b/allow_dovetailing.xml	Fri Feb 17 12:55:47 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="allow_dovetailing" name="Allow dovetailing" version="0.1.10">
+<tool id="allow_dovetailing" name="Allow dovetailing" version="0.1.13">
     <description>modifies proper_pair flag in bam files</description>
     <requirements>
-        <requirement type="package" version="0.1.10">readtagger</requirement>
+        <requirement type="package" version="0.1.13">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         allow_dovetailing -i '$input' -o '$output'
--- a/bam_readtagger.xml	Fri Feb 17 12:24:49 2017 -0500
+++ b/bam_readtagger.xml	Fri Feb 17 12:55:47 2017 -0500
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.1.10">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.1.13">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.1.10">readtagger</requirement>
+        <requirement type="package" version="0.1.13">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -a
--- a/deploy.sh	Fri Feb 17 12:24:49 2017 -0500
+++ b/deploy.sh	Fri Feb 17 12:55:47 2017 -0500
@@ -4,7 +4,7 @@
 
 CURRENT_DIR=$(dirname $0)
 
-echo "Installing planemo ... again"
+echo "Installing planemo"  # Would be great if the dependencies would persist in deployment mode
 pip install planemo
 
 echo "Deploying to Testtoolshed ..."