Mercurial > repos > mvdbeek > bam_readtagger

diff findcluster.xml @ 35:5aa7745dd6e3 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0291e13a331e921ff4c5c1859c83cd6f3a8f5f5d
author mvdbeek
date Wed, 21 Jun 2017 09:57:31 -0400
parents 5b08a7a4caa9
children e19ff7992765
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line diff
--- a/findcluster.xml	Wed Jun 21 09:38:09 2017 -0400
+++ b/findcluster.xml	Wed Jun 21 09:57:31 2017 -0400
@@ -16,14 +16,14 @@
             #if str($transposon_source.reference_source_selector) == "history":
                 --transposon_reference_fasta '$transposon_source.ref_file'
             #else :
-                --transposon_bwa_index '$reference_source.ref_file.fields.path'
+                --transposon_bwa_index '$transposon_source.ref_file.fields.path'
             #end if
         #end if
         #if $genome_source.ref_file:
             #if str($genome_source.reference_source_selector) == "history":
                 --genome_reference_fasta '$genome_source.ref_file'
             #else :
-                --genome_bwa_index '$reference_source.ref_file.fields.path'
+                --genome_bwa_index '$genome_source.ref_file.fields.path'
             #end if
         #end if
         --output_bam '$output_bam'