Mercurial > repos > mvdbeek > bam_readtagger

diff bam_readtagger.xml @ 48:54aafdb84833 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 45d0337e2a0d35e9a83d9c87c005c876c45ee054
author mvdbeek
date Wed, 12 Jun 2019 14:23:18 -0400
parents 21acaf15af89
children 534d6b4aebb0
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--- a/bam_readtagger.xml	Sun Feb 10 15:58:36 2019 -0500
+++ b/bam_readtagger.xml	Wed Jun 12 14:23:18 2019 -0400
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.4.17">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.5.0">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.4.17">readtagger</requirement>
+        <requirement type="package" version="0.5.0">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -s
@@ -23,9 +23,9 @@
         -o '$tagged_file'
     ]]></command>
     <inputs>
-        <param name="tag_file" argument="--tag_file" type="data" format="bam,qname_input_sorted.bam"/>
+        <param name="tag_file" argument="--tag_file" type="data" format="bam,qname_sorted.bam"/>
         <repeat name="alignment_series" title="Alignments">
-            <param name="annotate_with" argument="--annotate_with" type="data" format="bam,qname_input_sorted.bam"/>
+            <param name="annotate_with" argument="--annotate_with" type="data" format="bam,qname_sorted.bam"/>
             <param type="select" name="r_tag" label="First letter to use for read tag" value="A">
                 <expand macro="tag_options"/>
             </param>