Mercurial > repos > mvdbeek > bam_readtagger

comparison update_mapq.xml @ 12:c7ee722e48ad draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 13fe863ca4079d83d897fdf7e394a7474eea6117
author mvdbeek
date Tue, 14 Mar 2017 07:11:13 -0400
parents ddd06bee6a92
children 0bc66a93a62e
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11:ddd06bee6a92 12:c7ee722e48ad
1 <tool id="update_mapq" name="Update MAPQ score" version="0.3.6"> 1 <tool id="update_mapq" name="Update MAPQ score" version="0.3.7">
2 <description>of supplementary alignments</description> 2 <description>of supplementary alignments</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.3.6">readtagger</requirement> 4 <requirement type="package" version="0.3.7">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>update_mapq --version</version_command> 6 <version_command>update_mapq --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 update_mapq --source_path '$source_path' --remapped_path '$remapped_path' --output_path '$output_path' 8 update_mapq --source_path '$source_path' --remapped_path '$remapped_path' --output_path '$output_path'
9 ]]></command> 9 ]]></command>
10 <inputs> 10 <inputs>
11 <param argument="--source_path" label="Update supplementary MAPQ scores in this BAM file" type="data" format="bam"/> 11 <param argument="--source_path" label="Update supplementary MAPQ scores in this BAM file" type="data" format="bam"/>
12 <param argument="--remapped_path" label="Extarct MAPQ scores for secondary alignments from this BAM file." type="data" format="bam"/> 12 <param argument="--remapped_path" label="Extract MAPQ scores for secondary alignments from this BAM file." type="data" format="bam"/>
13 </inputs> 13 </inputs>
14 <outputs> 14 <outputs>
15 <data name="output_path" format="bam"/> 15 <data name="output_path" format="bam"/>
16 </outputs> 16 </outputs>
17 <tests> 17 <tests>