Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 60:b8b50498da48 draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit c6113946113e75a169fa5bb3d09cdb7d102c329e"
author mvdbeek
date Mon, 02 Sep 2019 09:45:01 -0400
parents b254fbfc9f9b
children 46c9abed6a71
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59:b254fbfc9f9b 60:b8b50498da48
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.11"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.12">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.11">readtagger</requirement> 4 <requirement type="package" version="0.5.12">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output' reference.fa 9 extract_variants '$input' '$output' reference.fa