Mercurial > repos > mvdbeek > bam_readtagger

comparison test.sh @ 0:92415330ad3e draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
author mvdbeek
date Fri, 17 Feb 2017 10:53:53 -0500
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-1:000000000000 0:92415330ad3e
1 #!/usr/bin/env bash
2
3 set -e
4
5 if grep -v 'python tag_reads.py' bam_tag_reads.xml
6 then
7 sed -i.bak 's/tag_reads -t/python \$__tool_directory__\/tag_reads.py -t/g' bam_tag_reads.xml
8 fi
9 cp ../tag_reads/tag_reads.py .
10 planemo test --conda_prefix ~/miniconda3