Mercurial > repos > mvdbeek > bam_readtagger

comparison bam_readtagger.xml @ 6:7434aa9a8638 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 76080bdc9e0d86e391587c2e147b9645e5d058d4
author mvdbeek
date Thu, 02 Mar 2017 11:07:53 -0500
parents f002e5797570
children daab5b2bfd11
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5:f002e5797570 6:7434aa9a8638
1 <tool id="bam_readtagger" name="Tag alignment files" version="0.3.0"> 1 <tool id="bam_readtagger" name="Tag alignment files" version="0.3.1">
2 <description>from multiple bam files</description> 2 <description>from multiple bam files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.3.0">readtagger</requirement> 7 <requirement type="package" version="0.3.1">readtagger</requirement>
8 </requirements> 8 </requirements>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 readtagger -t '$tag_file' -a 10 readtagger -t '$tag_file' -a
11 #for $element in $alignment_series 11 #for $element in $alignment_series
12 '$element.annotate_with':$element.r_tag:$element.m_tag 12 '$element.annotate_with':$element.r_tag:$element.m_tag