Mercurial > repos > mvdbeek > bam_readtagger

comparison bam_readtagger.xml @ 38:700df574a69c draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit e4cd04d8a19b57d6b23da64c3fda8978b51e33ef
author mvdbeek
date Thu, 14 Dec 2017 03:51:39 -0500
parents 73e3060d104f
children 7cad80dc3b58
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37:73e3060d104f 38:700df574a69c
1 <tool id="bam_readtagger" name="Tag alignment files" version="0.4.1"> 1 <tool id="bam_readtagger" name="Tag alignment files" version="0.4.4">
2 <description>from multiple bam files</description> 2 <description>from multiple bam files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.4.1">readtagger</requirement> 7 <requirement type="package" version="0.4.4">readtagger</requirement>
8 </requirements> 8 </requirements>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 readtagger -t '$tag_file' -s 10 readtagger -t '$tag_file' -s
11 #for $element in $alignment_series 11 #for $element in $alignment_series
12 '$element.annotate_with':$element.r_tag:$element.m_tag 12 '$element.annotate_with':$element.r_tag:$element.m_tag