Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 57:51dc1b8d010a draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 20d187a08a5c511cb38e7e60aeadfc2962dc03d3"
author mvdbeek
date Sat, 31 Aug 2019 09:48:07 -0400
parents 1a671aa9bd3e
children e909bc632614
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56:1a671aa9bd3e 57:51dc1b8d010a
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.8"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.9">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.8">readtagger</requirement> 4 <requirement type="package" version="0.5.9">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output' reference.fa 9 extract_variants '$input' '$output' reference.fa