Mercurial > repos > mvdbeek > bam_readtagger

comparison allow_dovetailing.xml @ 21:4dd759a1372c draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 62ae1272b167d6bc411f95fb324df9f6286f8450
author mvdbeek
date Wed, 19 Apr 2017 16:22:58 -0400
parents 44bbb5c4553f
children 32e191f572e1
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20:44bbb5c4553f 21:4dd759a1372c
1 <tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.13"> 1 <tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.14">
2 <description>modifies proper_pair flag in bam files</description> 2 <description>modifies proper_pair flag in bam files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.3.13">readtagger</requirement> 4 <requirement type="package" version="0.3.14">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"><![CDATA[ 6 <command detect_errors="aggressive"><![CDATA[
7 allow_dovetailing -i '$input' -o '$output' 7 allow_dovetailing -i '$input' -o '$output'
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
13 <data name="output" format="bam"/> 13 <data name="output" format="bam"/>
14 </outputs> 14 </outputs>
15 <tests> 15 <tests>
16 <test> 16 <test>
17 <param name="input" value="not_a_proper_pair.bam" ftype="bam"/> 17 <param name="input" value="not_a_proper_pair.bam" ftype="bam"/>
18 <output name="output" file="proper_pair.bam" ftype="bam" lines_diff="2"/> 18 <output name="output" file="proper_pair.bam" ftype="bam" lines_diff="4"/>
19 </test> 19 </test>
20 </tests> 20 </tests>
21 <help><![CDATA[ 21 <help><![CDATA[
22 .. code-block:: 22 .. code-block::
23 23