Mercurial > repos > mvdbeek > bam_readtagger

comparison add_matesequence.xml @ 29:4be52149b343 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 9b9334bf4c0364e3e06e64a9b3e532d0b10f93ba
author mvdbeek
date Tue, 09 May 2017 10:37:52 -0400
parents 41f2c4537540
children 9f0af01ad389
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28:41f2c4537540 29:4be52149b343
1 <tool id="add_matesequence" name="Add matesequence" version="0.3.21"> 1 <tool id="add_matesequence" name="Add matesequence" version="0.3.22">
2 <description>into tag field</description> 2 <description>into tag field</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.3.21">readtagger</requirement> 4 <requirement type="package" version="0.3.22">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>add_matesequence --version</version_command> 6 <version_command>add_matesequence --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 add_matesequence --file_to_annotate '$file_to_annotate' --annotate_source '$annotate_source' --output_path '$output' 8 add_matesequence --target '$file_to_annotate' --source '$annotate_source' --output_path '$output'
9 ]]></command> 9 ]]></command>
10 <inputs> 10 <inputs>
11 <param name="file_to_annotate" argument="--file_to_annotate" label="Annotate reads in this file with their mate sequence" type="data" format="bam"/> 11 <param name="file_to_annotate" argument="--file_to_annotate" label="Annotate reads in this file with their mate sequence" type="data" format="bam"/>
12 <param name="annotate_source" argument="--annotate_source" label="Use this file to find the mate sequence (can be same file as file_to_annotate)" type="data" format="bam"/> 12 <param name="annotate_source" argument="--annotate_source" label="Use this file to find the mate sequence (can be same file as file_to_annotate)" type="data" format="bam"/>
13 <param name="mate_sequence_tag" type="text" value="MS"/> 13 <param name="mate_sequence_tag" type="text" value="MS"/>