Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 61:46c9abed6a71 draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit c876b959858c0de1f28285bb78bb3d9daca40fd0"
author mvdbeek
date Tue, 03 Sep 2019 11:20:48 -0400
parents b8b50498da48
children e0dbdec47f06
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60:b8b50498da48 61:46c9abed6a71
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.12"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.13">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.12">readtagger</requirement> 4 <requirement type="package" version="0.5.13">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output' reference.fa 9 extract_variants '$input' '$output' reference.fa