Mercurial > repos > mvdbeek > bam_readtagger

comparison plot_coverage.xml @ 41:29734dbad6de draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 2e991a52c828b0234020e89748eafe1028e44a7d
author mvdbeek
date Sun, 01 Apr 2018 03:38:16 -0400
parents bb09f4ee2ff8
children fbfd1082de71
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40:bb09f4ee2ff8 41:29734dbad6de
1 <tool id="plot_coverage" name="Plot coverage" version="0.4.6"> 1 <tool id="plot_coverage" name="Plot coverage" version="0.4.10">
2 <description>as area plot between BAM files</description> 2 <description>as area plot between BAM files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.4.6">readtagger</requirement> 4 <requirement type="package" version="0.4.10">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"><![CDATA[ 6 <command detect_errors="aggressive"><![CDATA[
7 #import re 7 #import re
8 #set identifier1 = re.sub('[^\w\-_\.\,]', '_', str( $input1.element_identifier)) 8 #set identifier1 = re.sub('[^\w\-_\.\,]', '_', str( $input1.element_identifier))
9 #set identifier2 = re.sub('[^\w\-_\.\,]', '_', str( $input2.element_identifier)) 9 #set identifier2 = re.sub('[^\w\-_\.\,]', '_', str( $input2.element_identifier))
15 <param name="regions" type="text" label="Select regions to plot" optional="true" help="e.g X:1200000-1250000,X1250000-1300000. If left blank will plot all contigs/chromosomes."> 15 <param name="regions" type="text" label="Select regions to plot" optional="true" help="e.g X:1200000-1250000,X1250000-1300000. If left blank will plot all contigs/chromosomes.">
16 <sanitizer> 16 <sanitizer>
17 <valid initial="string.letters,string.digits"> 17 <valid initial="string.letters,string.digits">
18 <add value="-" /> 18 <add value="-" />
19 <add value="," /> 19 <add value="," />
20 <add value=":" />
20 </valid> 21 </valid>
21 </sanitizer> 22 </sanitizer>
22 </param> 23 </param>
23 </inputs> 24 </inputs>
24 <outputs> 25 <outputs>