Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 56:1a671aa9bd3e draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 9f56650c365197dbf3bc1f32a0f4edffd92d488d"
author mvdbeek
date Sat, 31 Aug 2019 07:18:32 -0400
parents 639daea35009
children 51dc1b8d010a
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55:639daea35009 56:1a671aa9bd3e
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.7"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.8">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.7">readtagger</requirement> 4 <requirement type="package" version="0.5.8">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output' reference.fa 9 extract_variants '$input' '$output' reference.fa