Mercurial > repos > mvdbeek > bam_readtagger

comparison findcluster.xml @ 71:156c4b5f3f38 draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit fee3f43c26cd13ffdb81d64a3c7809c570ba2194"
author mvdbeek
date Mon, 23 Mar 2020 16:41:55 +0000
parents 94731adae3e4
children 559f210b2c23
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70:94731adae3e4 71:156c4b5f3f38
1 <tool id="findcluster" name="Find clusters of reads" version="0.5.22"> 1 <tool id="findcluster" name="Find clusters of reads" version="0.5.23">
2 <description>in bam files</description> 2 <description>in bam files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.5.22">readtagger</requirement> 7 <requirement type="package" version="0.5.23">readtagger</requirement>
8 </requirements> 8 </requirements>
9 <version_command>findcluster --version</version_command> 9 <version_command>findcluster --version</version_command>
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 #import re 11 #import re
12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier))