Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 71:156c4b5f3f38 draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit fee3f43c26cd13ffdb81d64a3c7809c570ba2194"
author mvdbeek
date Mon, 23 Mar 2020 16:41:55 +0000
parents 94731adae3e4
children 559f210b2c23
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70:94731adae3e4 71:156c4b5f3f38
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.22"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.23">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.22">readtagger</requirement> 4 <requirement type="package" version="0.5.23">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output_alignment' reference.fa && 9 extract_variants '$input' '$output_alignment' reference.fa &&